Chapter 3. The Tables

Table of Contents

Chado Tables
ANALYSISFEATURE (Analysis Feature Relationships)
ANALYSISFEATUREPROP (Analysis to Genomic Feature Relationship Proprieties)
ANALYSISPROP (Analysis Properties)
CV (Controlled Vocabularies)
CVTERM (Controlled Vocabulary Terms)
CVTERM_DBXREF (Controlled Vocabulary Term Ancillary External Database References)
CVTERM_RELATIONSHIP (Controlled Vocabulary Term Relationships)
CVTERMPATH (Controlled Vocabulary Term relationship Paths)
CVTERMPROP (Controlled Vocabulary Term Properties)
DB (External Databases)
DBXREF (External Database Object Cross-References)
FEATURE (Genomic Feature)
FEATURE_CVTERM (Feature Typing/Tagging)
FEATURE_DBXREF (Feature to External Database Object Cross-References)
FEATURE_GENOTYPE (Feature to Genotype Relationships)
FEATURE_RELATIONSHIP (Feature Inter-Relationships)
FEATURE_SYNONYM (Genomic Feature to Synonym Relationships)
FEATURELOC (Feature Locations)
FEATUREPROP (Feature Properties)
GENOTYPE (Genotypes)
ND_EXPERIMENT (Natural Diversity Experiment Result Set)
ND_EXPERIMENT_GENOTYPE (Natural Diversity Experiment Result Set to Genotype Relationships)
ND_EXPERIMENT_STOCK (Natural Diversity Experiment Result Set to Stock Relationships)
ND_EXPERIMENT_STOCKPROP (Natural Diversity Experiment Result Set to Stock Relationship Properties)
ND_EXPERIMENTPROP (Natural Diversity Experiment Result Set Properties)
ND_GEOLOCATION (Natural Diversity Geolocation)
ORGANISM
ORGANISM_DBXREF (Organism to External Database Object Cross-References)
PUB (Publication or Other Documentation of Provenance)
STOCK (Stocks)
STOCK_DBXREF (Stock to External Database Object Cross-References)
STOCK_DBXREFPROP (Stock External Database Entity Properties)
STOCK_CVTERM (Stock Typing/Tagging)
STOCK_RELATIONSHIP (Stock Inter-Relationships)
STOCKPROP (Stock Properties)
SYNONYM (Alternate Names)
Babase Chado Extensions
ANALYSIS (Analyses)
ANALYSIS_DBXREF (Analysis to External Database Object Cross-References)
ANALYSIS_CVTERM (Analysis Typing/Tagging)
ANALYSIS_RELATIONSHIP (Analysis Inter-Relationships)
ANALYSIS_ND_EXPERIMENT (Analysis to Natural Diversity Experiment Result Set Relationships)
ND_EXPERIMENT_FEATURE (Natural Diversity Experiment Result Set to Feature Relationships)

This chapter documents both the genomics related Babase tables and the Chado tables used by Babase.

Unless otherwise noted all columns may be NULL.


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