[Babase] Re: Upmpi ready-ish

Susan Alberts alberts at duke.edu
Tue Dec 15 10:49:07 EST 2009


On Dec 15, 2009, at 10:41 AM, Lacey Maryott Roerish wrote:

> 867	218	2.2	01/07/1999	LUI	AS	LOZ,LIZ					N
>
> I think the same thing goes here.  This is the whole MPI.  So it  
> seems like we should (for both of these), just have these end up on  
> two lines that have the same seqid  right?

This does not count as an MPI in my view. There is no third-party  
interaction. I think this is not an MPI.

But in theory an MPI could begin like this. In this case again I think  
that we need to split this one line into two separate interactions.   
Make sense?

S

>
> Meaning that we change the rule to allow 'AS' to have more than 1  
> actor or actee? I'm not sure if Karl has built in a rule disallowing  
> the first two lines of an interaction to both have act be AS. Karl?
>
> Thx
> Lacey
>
> On Tue, Dec 15, 2009 at 10:25 AM, Susan Alberts <alberts at duke.edu>  
> wrote:
> Ok thanks. Do the rules allow two AS's to begin the interaction? If  
> so, then we should have two AS's here. If not, then we probably need  
> to change the rule. Also, it seems that we should change the seq = 1  
> rule we talked about before, so that two AS's in a row (as in this  
> case) can have seq = 1. Does this make sense?
> S
>
>
> On Dec 15, 2009, at 9:32 AM, Lacey Maryott Roerish wrote:
>
> 474     117     1.22    24/07/1999      DOX,VAT AS       
> VIA                                     N
> 475     117     1.22    24/07/1999      VEI     +       VIA
>
> On Tue, Dec 15, 2009 at 9:13 AM, Susan Alberts <alberts at duke.edu>  
> wrote:
> It looks to me like it should be two AS's.
>
> If you send me the whole MPI I might be able to comment more fully.
>
> S
>
>
> On Dec 15, 2009, at 9:08 AM, Lacey Maryott Roerish wrote:
>
> So I just came across an error regarding this error message.
>
> 474     117     1.22    24/07/1999      DOX,VAT AS       
> VIA                                     N
>
> Should this be changed to a VS?
>
> L
>
> On Mon, Dec 14, 2009 at 9:20 PM, Susan Alberts <alberts at duke.edu>  
> wrote:
>
>
> I think we want the original: "two rows can't both have seq = 1
> unless they are both "versus" interactions" unless you have
> some reason to want a change.
>
> Lacey and I have worked it out.
>
> OK
>
>
> S
>
>
>
>
>
> Karl <kop at meme.com>
> Free Software:  "You don't pay back, you pay forward."
>             -- Robert A. Heinlein
>
>
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> ------------------------------------------------------------
> Susan Alberts, Dept of Biology, Duke University, Box 90338, Durham  
> NC 27708. Phone 919-660-7272, FAX 919-660-7293
>
>
>
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>
>
> -- 
> - -
> Lacey K. Maryott Roerish
> Alberts Lab
> Department of Biology
> Duke University
> ph: 919-660-7306
> fax: 919-660-7293
> Lacey.Maryott at duke.edu
> _______________________________________________
> Babase mailing list
> Babase at www.eco.princeton.edu
> http://www.eco.princeton.edu/mailman/listinfo/babase
>
> ------------------------------------------------------------
> Susan Alberts, Dept of Biology, Duke University, Box 90338, Durham  
> NC 27708. Phone 919-660-7272, FAX 919-660-7293
>
>
>
> _______________________________________________
> Babase mailing list
> Babase at www.eco.princeton.edu
> http://www.eco.princeton.edu/mailman/listinfo/babase
>
>
>
> -- 
> - -
> Lacey K. Maryott Roerish
> Alberts Lab
> Department of Biology
> Duke University
> ph: 919-660-7306
> fax: 919-660-7293
> Lacey.Maryott at duke.edu
> _______________________________________________
> Babase mailing list
> Babase at www.eco.princeton.edu
> http://www.eco.princeton.edu/mailman/listinfo/babase
>
> ------------------------------------------------------------
> Susan Alberts, Dept of Biology, Duke University, Box 90338, Durham  
> NC 27708. Phone 919-660-7272, FAX 919-660-7293
>
>
>
> _______________________________________________
> Babase mailing list
> Babase at www.eco.princeton.edu
> http://www.eco.princeton.edu/mailman/listinfo/babase
>
>
>
> -- 
> - -
> Lacey K. Maryott Roerish
> Alberts Lab
> Department of Biology
> Duke University
> ph: 919-660-7306
> fax: 919-660-7293
> Lacey.Maryott at duke.edu
> _______________________________________________
> Babase mailing list
> Babase at www.eco.princeton.edu
> http://www.eco.princeton.edu/mailman/listinfo/babase

------------------------------------------------------------
Susan Alberts, Dept of Biology, Duke University, Box 90338, Durham NC  
27708. Phone 919-660-7272, FAX 919-660-7293





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