[Babase] Re: Upmpi ready-ish
Karl O. Pinc
kop at meme.com
Fri Dec 11 15:16:58 EST 2009
On 12/11/2009 12:56:44 PM, Lacey Maryott Roerish wrote:
> Hey Karl,
>
> I tried just a small chunk, MID 1- 199 and got quite a few errors.
> It
> doesn't seem to like 2 Actors on the first line of the interaction.
> I
> checked the docs to make sure I was following the format and it seems
> right,
> it is just saying there are more than 3 characters.
Try it again and see if the Seq numbers come out right.
Thanks.
>
> Let me know when I should try again or what I should try
> Thanks
> L
>
> On Fri, Dec 11, 2009 at 1:10 AM, Karl O. Pinc <kop at meme.com> wrote:
>
> > Hi Lacey,
> >
> > You can try the upmpi program in babase_test. The
> > babase database does not have the latest tables etc.
> >
> > Attached is the text file I used to create the MPIACTS table rows.
> > You will also want to create PARTUNKS and CONTEXT_TYPES.
> >
> > We may want to talk about unknown individual codes.
> >
> > If you get things to upload you may want to VACUUM ANALYZE
> > before doing any testing. After the very first upload
> > (attempt even) things slow down a lot until you do this.
> > Also don't forget to run queries 2 times and discard the
> > 1st run because we expect the database to fit in memory
> > (usually).
> >
> > I have not yet added group (via members) into the
> > MPI_EVENTS view.
> >
> > I have also tweaked the upmpi documentation slightly.
> > Do you have any further comment? At least check out
> > the new footnotes.
> >
> > Karl <kop at meme.com>
> > Free Software: "You don't pay back, you pay forward."
> > -- Robert A. Heinlein
> >
> >
>
>
> --
> - -
> Lacey K. Maryott Roerish
> Alberts Lab
> Department of Biology
> Duke University
> ph: 919-660-7306
> fax: 919-660-7293
> Lacey.Maryott at duke.edu
>
>
Karl <kop at meme.com>
Free Software: "You don't pay back, you pay forward."
-- Robert A. Heinlein
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