[Babase] Re: Upmpi ready-ish
Lacey Maryott Roerish
lroerish4 at gmail.com
Tue Dec 15 10:41:21 EST 2009
867 218 2.2 01/07/1999 LUI AS LOZ,LIZ N
I think the same thing goes here. This is the whole MPI. So it seems like
we should (for both of these), just have these end up on two lines that have
the same seqid right?
Meaning that we change the rule to allow 'AS' to have more than 1 actor or
actee? I'm not sure if Karl has built in a rule disallowing the first two
lines of an interaction to both have act be AS. Karl?
Thx
Lacey
On Tue, Dec 15, 2009 at 10:25 AM, Susan Alberts <alberts at duke.edu> wrote:
> Ok thanks. Do the rules allow two AS's to begin the interaction? If so,
> then we should have two AS's here. If not, then we probably need to change
> the rule. Also, it seems that we should change the seq = 1 rule we talked
> about before, so that two AS's in a row (as in this case) can have seq = 1.
> Does this make sense?
> S
>
>
> On Dec 15, 2009, at 9:32 AM, Lacey Maryott Roerish wrote:
>
> 474 117 1.22 24/07/1999 DOX,VAT AS VIA
>> N
>> 475 117 1.22 24/07/1999 VEI + VIA
>>
>>
>> On Tue, Dec 15, 2009 at 9:13 AM, Susan Alberts <alberts at duke.edu> wrote:
>> It looks to me like it should be two AS's.
>>
>> If you send me the whole MPI I might be able to comment more fully.
>>
>> S
>>
>>
>> On Dec 15, 2009, at 9:08 AM, Lacey Maryott Roerish wrote:
>>
>> So I just came across an error regarding this error message.
>>
>> 474 117 1.22 24/07/1999 DOX,VAT AS VIA
>> N
>>
>> Should this be changed to a VS?
>>
>> L
>>
>> On Mon, Dec 14, 2009 at 9:20 PM, Susan Alberts <alberts at duke.edu> wrote:
>>
>>
>> I think we want the original: "two rows can't both have seq = 1
>> unless they are both "versus" interactions" unless you have
>> some reason to want a change.
>>
>> Lacey and I have worked it out.
>>
>> OK
>>
>>
>> S
>>
>>
>>
>>
>>
>> Karl <kop at meme.com>
>> Free Software: "You don't pay back, you pay forward."
>> -- Robert A. Heinlein
>>
>>
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>> ------------------------------------------------------------
>> Susan Alberts, Dept of Biology, Duke University, Box 90338, Durham NC
>> 27708. Phone 919-660-7272, FAX 919-660-7293
>>
>>
>>
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>> Babase at www.eco.princeton.edu
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>>
>>
>> --
>> - -
>> Lacey K. Maryott Roerish
>> Alberts Lab
>> Department of Biology
>> Duke University
>> ph: 919-660-7306
>> fax: 919-660-7293
>> Lacey.Maryott at duke.edu
>> _______________________________________________
>> Babase mailing list
>> Babase at www.eco.princeton.edu
>> http://www.eco.princeton.edu/mailman/listinfo/babase
>>
>> ------------------------------------------------------------
>> Susan Alberts, Dept of Biology, Duke University, Box 90338, Durham NC
>> 27708. Phone 919-660-7272, FAX 919-660-7293
>>
>>
>>
>> _______________________________________________
>> Babase mailing list
>> Babase at www.eco.princeton.edu
>> http://www.eco.princeton.edu/mailman/listinfo/babase
>>
>>
>>
>> --
>> - -
>> Lacey K. Maryott Roerish
>> Alberts Lab
>> Department of Biology
>> Duke University
>> ph: 919-660-7306
>> fax: 919-660-7293
>> Lacey.Maryott at duke.edu
>> _______________________________________________
>> Babase mailing list
>> Babase at www.eco.princeton.edu
>> http://www.eco.princeton.edu/mailman/listinfo/babase
>>
>
> ------------------------------------------------------------
> Susan Alberts, Dept of Biology, Duke University, Box 90338, Durham NC
> 27708. Phone 919-660-7272, FAX 919-660-7293
>
>
>
> _______________________________________________
> Babase mailing list
> Babase at www.eco.princeton.edu
> http://www.eco.princeton.edu/mailman/listinfo/babase
>
--
- -
Lacey K. Maryott Roerish
Alberts Lab
Department of Biology
Duke University
ph: 919-660-7306
fax: 919-660-7293
Lacey.Maryott at duke.edu
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