Uses of Class
babase.ranker.Individual

Packages that use Individual

babase.ranker

Uses of Individual in babase.ranker

Fields in babase.ranker declared as Individual

protected Individual[]

StatsPanel._individuals

Fields in babase.ranker with type parameters of type Individual

java.util.ArrayList<Individual>	Individual.children
java.util.PriorityQueue<Individual>	Cage.domPQ
java.util.HashMap<java.lang.String,Individual>	Cage.individuals
java.util.PriorityQueue<Individual>	Cage.matrixRankPQ
java.util.ArrayList<Individual>	Individual.parents
java.util.Vector<Individual>	Cage.posMatrix

Methods in babase.ranker that return Individual

Individual[]	Cage.getArray() Produces an array of individuals in the cage in no particular order.
Individual	Cage.getIndividual(int indNum) Returns and individual given their individual number which represents their number in the position matrix.
Individual	Cage.getIndividual(java.lang.String sName) Returns an individual given their sname.
Individual	Cage.getIndividualRanked(int rank) Returns an individual at a given ranking within the Cage
static Individual[]	Utils.readListOfIndividualIdsFromFile(java.lang.String fileName) Read a list of individual ids from a file.

Methods in babase.ranker that return types with arguments of type Individual

java.util.Vector<Individual>

AutoRanker.DFS(Cage c) Performs a depth first search in order to get a post ordering of individuals.

Methods in babase.ranker with parameters of type Individual

int	MatrixScoreComparator.compare(Individual i1, Individual i2)
void	Cage.createEdge(Individual parent, Individual child) Creates a connection between parent and child individuals in a given Cage.
static int	Utils.findIndividualById(java.lang.String id, Individual[] individuals)
void	Cage.put(Individual i) Inserts an individual into the cage at the next available rank without changing the orignal matrix position of that indivdual in his original cage.
void	Cage.putIndividual(Individual i) Adds an individual to the cage.
void	Cage.putIndividualRanked(Individual i) Inserts an indiviudal into the cage at the next available rank changing his matrix position to reflect that of the current cage and putting his matrix position in the ranking.
static int[][]	Utils.readInteractionMatrixFromFile(java.lang.String fileName, Individual[] individuals) Construct an interaction matrix for a given list of individuals from a file.
void	Cage.remove(Individual i) Removes an individual from the cage.
void	Cage.removeEdge(Individual parent, Individual child) Removes a connection between parent and child individuals in a given Cage.
void	AutoRanker.search(Individual i, java.util.Vector<Individual> postorder) The actual depth first search implementation
void	AutoRanker.searchMod(Individual i, Cage scc, java.util.Vector<Individual> postorder) Performs a modified depth first search in order to find the SCCs.

Method parameters in babase.ranker with type arguments of type Individual

java.util.ArrayList<Cage>	AutoRanker.DFST(Cage c, java.util.Vector<Individual> postorder) Do a modified depth first search on a Cage using the post ordering as starting nodes in order to identify the strongly connected components and create an arraylist which contains them individually.
void	AutoRanker.search(Individual i, java.util.Vector<Individual> postorder) The actual depth first search implementation
void	AutoRanker.searchMod(Individual i, Cage scc, java.util.Vector<Individual> postorder) Performs a modified depth first search in order to find the SCCs.

Constructors in babase.ranker with parameters of type Individual

StatsPanel(InteractionMatrixDisplay interactionMatrixDisplay, Ranking ranks, Individual[] individuals, int[][] matrix)