From: Karl O. Pinc <kop@karlpinc.com>
Date: Sat, 14 Dec 2019 03:04:27 +0000 (-0600)
Subject: Reorganize examples dir as relative to target destination
X-Git-Url: https://papio.biology.duke.edu/gitweb/?a=commitdiff_plain;h=9d4472a423ed19734054c3c07dfd95ecf37be0b4;p=pgwui_server

Reorganize examples dir as relative to target destination
---

diff --git a/examples/development.ini b/examples/development.ini
deleted file mode 100644
index 057c3e4..0000000
--- a/examples/development.ini
+++ /dev/null
@@ -1,197 +0,0 @@
-###
-# PGWUI_Server configuration
-#
-# Configuration changes require a server restart!
-# (But see the pserve command's --reload option.)
-###
-
-[app:main]
-
-# PasteDeploy configuration
-# https://docs.pylonsproject.org/projects/pyramid/en/latest/narr/paste.html#pastedeploy-entry-points
-
-use = egg:PGWUI_Server
-
-
-#
-# PGWUI configuration
-#
-
-# Postgres client configuration.
-
-# Both pgwui.pg_host and pgwui.pg_port are optional;
-# they default to the Unix PG socket and the default Postgres port.
-# An empty string for host means use the unix socket.
-pgwui.pg_host =
-pgwui.pg_port = 5432
-
-# There are occasions when PGWUI uses a default database.  (optional)
-pgwui.default_db = template1
-
-# What PGWUI modules to use.
-pyramid.includes =
-    pgwui_logout
-    pgwui_upload
-    pyramid_debugtoolbar
-
-# Whether or not to change the db content.  (required)
-pgwui.dry_run = False
-
-# Routing
-
-# Routes are what call up specific pages.  They are usually the
-# part of the URL which comes after the http://example.com.
-#
-# All routes should probably begin with a "/" character but
-# if they do not a "/" will be automatically prepended.
-#
-# A full URL may be given as a route.  The is useful for redirecting
-# to other sites.
-#
-# For more information on route syntax see:
-# https://docs.pylonsproject.org/projects/pyramid/en/master/narr/urldispatch.html#route-pattern-syntax
-
-# A prefix for all routes.  (optional)  If the prefix is "/a/b/c" then
-# all URLs will begin with something like: http://example.com/a/b/c
-# The default is no prefix.
-# pgwui.route_prefix =
-
-# Overriding routes of specific PGWUI components
-
-# The syntax is "name" = "route", one per line.  The "name" is the
-# name of the PGWUI component.  "route" is the route to use to access
-# the component.  So to access the logout page at
-# http://example.com/logmeout the line would be: logout = /logmeout
-#
-# Overriding routes is optional.
-#
-# The default for some PGWUI components are:
-# pgwui.routes =
-#   logout = /logout
-#   upload = /upload
-
-# Settings validation
-
-# Whether or not to validate the session.secret setting.  (optional)
-# session.secret must be valid to detect Cross-Site Request Forgery (CSRF)
-# vulnerabilties.  Validation is on by default.
-pgwui.validate_hmac = False
-
-# Take uploaded column headings literally?
-# The available choices are:
-#   on   The file's column headings, as typed, are the table's column names.
-#   off  The file's column headings are case-insensitive.
-#   ask  Put a "Take Column Headings Literally" checkbox on the upload screen.
-# Optional setting.  The default is "off".
-#
-# Caution: Non-ASCII column names, particularly in the Turkish locale,
-# are not guaranteed to be case-insensitive.
-pgwui.literal_column_headings = off
-
-
-#
-# Pyramid configuration
-# https://docs.pylonsproject.org/projects/pyramid/en/latest/narr/environment.html
-#
-pyramid.reload_templates = True
-pyramid.debug_authorization = False
-pyramid.debug_notfound = False
-pyramid.debug_routematch = False
-pyramid.default_locale_name = en
-#pyramid.includes = 
-#    pyramid_debugtoolbar
-
-# For turning off the toolbar
-#pyramid.debug_authorization = False
-#pyramid.debug_notfound = False
-#pyramid.debug_routematch = False
-#pyramid.default_locale_name = en
-
-# By default, the toolbar only appears for clients from IP addresses
-# '127.0.0.1' and '::1'.
-# debugtoolbar.hosts = 127.0.0.1 ::1
-
-
-#
-# Beaker session management configuration
-# https://beaker.readthedocs.io/en/latest/configuration.html
-#
-session.type = memory
-session.lock_dir = /var/lock/pgwui_server
-# Remove cookie in browser on browser close.
-session.cookie_expires = True
-session.key = pgwui_server
-# HMAC secret
-#session.secret = xxxxxxrandomstring40characterslongxxxxxx
-# Send cookie only over https
-# (True for production)
-session.secure = False
-# Sessions timeout after an hour if unused.
-session.timeout = 3600
-# Pyramid sends cookies for exception pages
-session.cookie_on_exception = True
-
-
-#
-# Mako templates
-#
-#mako.strict_undefined = True
-
-
-###
-# wsgi server configuration
-###
-
-[server:main]
-use = egg:waitress#main
-
-# A value for "host" of "*", instead of "127.0.0.1", exposes the
-# application to the network.  Unless you trust everyone and every
-# device that might access your network this will, at minimum, expose
-# what could be highly sensitive information.  See the documentation
-# for more secure alternatives.
-host = 127.0.0.1
-port = 6543
-
-
-###
-# logging configuration
-# http://docs.pylonsproject.org/projects/pyramid/en/latest/narr/logging.html
-###
-
-[loggers]
-keys = root, pgwui_server, pgwui_upload
-
-[handlers]
-keys = console
-
-[formatters]
-keys = generic
-
-[logger_root]
-level = INFO
-handlers = console
-
-[handler_console]
-class = StreamHandler
-args = (sys.stderr,)
-level = NOTSET
-formatter = generic
-
-[formatter_generic]
-format = %(asctime)s %(levelname)-5.5s [%(name)s][%(threadName)s] %(message)s
-
-# These sections don't do anything as given.  They are provided so that
-# logging can be customized per pgwui package.  You may want to add
-# "propagate = False" lines to avoid duplicate logging if you customize
-# them to emit log messages.
-
-[logger_pgwui_server]
-level = DEBUG
-handlers =
-qualname = pgwui_server
-
-[logger_pgwui_upload]
-level = DEBUG
-handlers =
-qualname = pgwui_upload
diff --git a/examples/etc/pgwui.ini b/examples/etc/pgwui.ini
new file mode 100644
index 0000000..28ee039
--- /dev/null
+++ b/examples/etc/pgwui.ini
@@ -0,0 +1,203 @@
+###
+# PGWUI_Server configuration
+#
+# Configuration changes require a server restart!
+# (Unless you've done something not recommended to start the server.)
+###
+
+[app:main]
+
+# PasteDeploy configuration
+# https://docs.pylonsproject.org/projects/pyramid/en/latest/narr/paste.html#pastedeploy-entry-points
+
+use = egg:PGWUI_Server
+
+
+#
+# PGWUI configuration
+#
+
+# Postgres client configuration.
+
+# Both pgwui.pg_host and pgwui.pg_port are optional;
+# they default to the Unix PG socket and the default Postgres port.
+# An empty string for host means use the unix socket.
+pgwui.pg_host =
+pgwui.pg_port = 5432
+
+# There are occasions when PGWUI uses a default database.  (optional)
+pgwui.default_db = template1
+
+# What PGWUI modules to use.
+pyramid.includes =
+    pgwui_logout
+    pgwui_upload
+
+# Whether or not to change the db content.  (required)
+pgwui.dry_run = False
+
+# Routing
+
+# Routes are what call up specific pages.  They are the
+# part of the URL which comes after the http://example.com.
+#
+# All routes should probably begin with a "/" character but
+# if they do not a "/" will be automatically prepended.
+#
+# A full URL may be given as a route.  The is useful for redirecting
+# to other sites.
+#
+# For more information on route syntax see:
+# https://docs.pylonsproject.org/projects/pyramid/en/master/narr/urldispatch.html#route-pattern-syntax
+
+# A prefix for all routes.  (optional)  If the prefix is "/a/b/c" then
+# all URLs will begin with something like: http://example.com/a/b/c
+# The default is no prefix.
+# pgwui.route_prefix =
+
+# Overriding routes of specific PGWUI components
+
+# The syntax is "name" = "route", one per line.  The "name" is the
+# name of the PGWUI component.  "route" is the route to use to access
+# the component.  So to access the logout page at
+# http://example.com/logmeout the line would be: logout = /logmeout
+#
+# Overriding routes is optional.
+#
+# The default for some PGWUI components are:
+# pgwui.routes =
+#   logout = /logmeout
+#   upload = /put-in
+
+# Settings validation
+
+# Whether or not to validate the session.secret setting.  (optional)
+# session.secret must be valid to detect Cross-Site Request Forgery (CSRF)
+# vulnerabilties.  Validation is on by default.
+# pgwui.validate_hmac = True
+
+# Take uploaded column headings literally?
+# The available choices are:
+#   on   The file's column headings, as typed, are the table's column names.
+#   off  The file's column headings are case-insensitive.
+#   ask  Put a "Take Column Headings Literally" checkbox on the upload screen.
+# Optional setting.  The default is "off".
+#
+# Caution: Non-ASCII column names, particularly in the Turkish locale,
+# are not guaranteed to be case-insensitive.
+pgwui.literal_column_headings = off
+
+
+#
+# Pyramid configuration
+# https://docs.pylonsproject.org/projects/pyramid/en/latest/narr/environment.html
+#
+pyramid.reload_templates = False
+pyramid.debug_authorization = False
+pyramid.debug_notfound = False
+pyramid.debug_routematch = False
+pyramid.default_locale_name = en
+
+
+#
+# Beaker session management configuration
+# https://beaker.readthedocs.io/en/latest/configuration.html
+#
+session.type = memory
+session.lock_dir = /var/lock/pgwui_server
+# Remove cookie in browser on browser close.
+session.cookie_expires = True
+session.key = pgwui_server
+# HMAC secret
+#session.secret = xxxxxxrandomstring40characterslongxxxxxx
+# Send cookie only over https
+session.secure = True
+# Sessions timeout after an hour if unused.
+session.timeout = 3600
+# Pyramid sends cookies for exception pages
+session.cookie_on_exception = True
+
+
+#
+# Mako templates
+#
+#mako.strict_undefined = True
+
+
+###
+# wsgi server configuration
+###
+
+[server:main]
+# When using a standalone WSGI server like uwsgi or Apache's mod_wsgi
+# use the pgwui_server's WSGI.
+#use = egg:PGWUI_Server
+
+# Use waitress as the webserver and configure a reverse-proxy to the network.
+#
+# An Nginx (https://www.nginx.org) reverse-proxy configuration might look like:
+#
+#     location / {
+#         proxy_pass       http://localhost:6543;
+#         proxy_set_header Host      $host;
+#         proxy_set_header X-Real-IP $remote_addr;
+#     }
+#
+use = egg:waitress#main
+
+# A value for "host" of "*", instead of "127.0.0.1", exposes the
+# application to the network.  Unless you trust everyone and every
+# device that might access your network this will, at minimum, expose
+# what could be highly sensitive information.  See the documentation
+# for more secure alternatives.
+host = 127.0.0.1
+port = 6543
+
+
+###
+# logging configuration
+# http://docs.pylonsproject.org/projects/pyramid/en/latest/narr/logging.html
+###
+
+[loggers]
+keys = root, pgwui_server, pgwui_upload
+
+[handlers]
+keys = syslog, console
+
+[formatters]
+keys = generic
+
+[logger_root]
+level = WARN
+handlers = console
+
+[handler_syslog]
+class = logging.handlers.SysLogHandler
+args = ('/dev/log',)
+level = NOTSET
+formatter = generic
+
+[handler_console]
+class = StreamHandler
+args = (sys.stderr,)
+level = NOTSET
+formatter = generic
+
+[formatter_generic]
+format = %(asctime)s %(levelname)-5.5s [%(name)s][%(threadName)s] %(message)s
+
+# These sections don't do anything as given.  They are provided so that
+# logging can be customized per pgwui package.  You may want to add
+# "propagate = False" lines to avoid duplicate logging if you customize
+# them to emit log messages.
+
+[logger_pgwui_server]
+level = INFO
+handlers =
+qualname = pgwui_server
+
+[logger_pgwui_upload]
+level = INFO
+handlers =
+qualname = pgwui_upload
diff --git a/examples/misc/development.ini b/examples/misc/development.ini
new file mode 100644
index 0000000..057c3e4
--- /dev/null
+++ b/examples/misc/development.ini
@@ -0,0 +1,197 @@
+###
+# PGWUI_Server configuration
+#
+# Configuration changes require a server restart!
+# (But see the pserve command's --reload option.)
+###
+
+[app:main]
+
+# PasteDeploy configuration
+# https://docs.pylonsproject.org/projects/pyramid/en/latest/narr/paste.html#pastedeploy-entry-points
+
+use = egg:PGWUI_Server
+
+
+#
+# PGWUI configuration
+#
+
+# Postgres client configuration.
+
+# Both pgwui.pg_host and pgwui.pg_port are optional;
+# they default to the Unix PG socket and the default Postgres port.
+# An empty string for host means use the unix socket.
+pgwui.pg_host =
+pgwui.pg_port = 5432
+
+# There are occasions when PGWUI uses a default database.  (optional)
+pgwui.default_db = template1
+
+# What PGWUI modules to use.
+pyramid.includes =
+    pgwui_logout
+    pgwui_upload
+    pyramid_debugtoolbar
+
+# Whether or not to change the db content.  (required)
+pgwui.dry_run = False
+
+# Routing
+
+# Routes are what call up specific pages.  They are usually the
+# part of the URL which comes after the http://example.com.
+#
+# All routes should probably begin with a "/" character but
+# if they do not a "/" will be automatically prepended.
+#
+# A full URL may be given as a route.  The is useful for redirecting
+# to other sites.
+#
+# For more information on route syntax see:
+# https://docs.pylonsproject.org/projects/pyramid/en/master/narr/urldispatch.html#route-pattern-syntax
+
+# A prefix for all routes.  (optional)  If the prefix is "/a/b/c" then
+# all URLs will begin with something like: http://example.com/a/b/c
+# The default is no prefix.
+# pgwui.route_prefix =
+
+# Overriding routes of specific PGWUI components
+
+# The syntax is "name" = "route", one per line.  The "name" is the
+# name of the PGWUI component.  "route" is the route to use to access
+# the component.  So to access the logout page at
+# http://example.com/logmeout the line would be: logout = /logmeout
+#
+# Overriding routes is optional.
+#
+# The default for some PGWUI components are:
+# pgwui.routes =
+#   logout = /logout
+#   upload = /upload
+
+# Settings validation
+
+# Whether or not to validate the session.secret setting.  (optional)
+# session.secret must be valid to detect Cross-Site Request Forgery (CSRF)
+# vulnerabilties.  Validation is on by default.
+pgwui.validate_hmac = False
+
+# Take uploaded column headings literally?
+# The available choices are:
+#   on   The file's column headings, as typed, are the table's column names.
+#   off  The file's column headings are case-insensitive.
+#   ask  Put a "Take Column Headings Literally" checkbox on the upload screen.
+# Optional setting.  The default is "off".
+#
+# Caution: Non-ASCII column names, particularly in the Turkish locale,
+# are not guaranteed to be case-insensitive.
+pgwui.literal_column_headings = off
+
+
+#
+# Pyramid configuration
+# https://docs.pylonsproject.org/projects/pyramid/en/latest/narr/environment.html
+#
+pyramid.reload_templates = True
+pyramid.debug_authorization = False
+pyramid.debug_notfound = False
+pyramid.debug_routematch = False
+pyramid.default_locale_name = en
+#pyramid.includes = 
+#    pyramid_debugtoolbar
+
+# For turning off the toolbar
+#pyramid.debug_authorization = False
+#pyramid.debug_notfound = False
+#pyramid.debug_routematch = False
+#pyramid.default_locale_name = en
+
+# By default, the toolbar only appears for clients from IP addresses
+# '127.0.0.1' and '::1'.
+# debugtoolbar.hosts = 127.0.0.1 ::1
+
+
+#
+# Beaker session management configuration
+# https://beaker.readthedocs.io/en/latest/configuration.html
+#
+session.type = memory
+session.lock_dir = /var/lock/pgwui_server
+# Remove cookie in browser on browser close.
+session.cookie_expires = True
+session.key = pgwui_server
+# HMAC secret
+#session.secret = xxxxxxrandomstring40characterslongxxxxxx
+# Send cookie only over https
+# (True for production)
+session.secure = False
+# Sessions timeout after an hour if unused.
+session.timeout = 3600
+# Pyramid sends cookies for exception pages
+session.cookie_on_exception = True
+
+
+#
+# Mako templates
+#
+#mako.strict_undefined = True
+
+
+###
+# wsgi server configuration
+###
+
+[server:main]
+use = egg:waitress#main
+
+# A value for "host" of "*", instead of "127.0.0.1", exposes the
+# application to the network.  Unless you trust everyone and every
+# device that might access your network this will, at minimum, expose
+# what could be highly sensitive information.  See the documentation
+# for more secure alternatives.
+host = 127.0.0.1
+port = 6543
+
+
+###
+# logging configuration
+# http://docs.pylonsproject.org/projects/pyramid/en/latest/narr/logging.html
+###
+
+[loggers]
+keys = root, pgwui_server, pgwui_upload
+
+[handlers]
+keys = console
+
+[formatters]
+keys = generic
+
+[logger_root]
+level = INFO
+handlers = console
+
+[handler_console]
+class = StreamHandler
+args = (sys.stderr,)
+level = NOTSET
+formatter = generic
+
+[formatter_generic]
+format = %(asctime)s %(levelname)-5.5s [%(name)s][%(threadName)s] %(message)s
+
+# These sections don't do anything as given.  They are provided so that
+# logging can be customized per pgwui package.  You may want to add
+# "propagate = False" lines to avoid duplicate logging if you customize
+# them to emit log messages.
+
+[logger_pgwui_server]
+level = DEBUG
+handlers =
+qualname = pgwui_server
+
+[logger_pgwui_upload]
+level = DEBUG
+handlers =
+qualname = pgwui_upload
diff --git a/examples/pgwui.ini b/examples/pgwui.ini
deleted file mode 100644
index 28ee039..0000000
--- a/examples/pgwui.ini
+++ /dev/null
@@ -1,203 +0,0 @@
-###
-# PGWUI_Server configuration
-#
-# Configuration changes require a server restart!
-# (Unless you've done something not recommended to start the server.)
-###
-
-[app:main]
-
-# PasteDeploy configuration
-# https://docs.pylonsproject.org/projects/pyramid/en/latest/narr/paste.html#pastedeploy-entry-points
-
-use = egg:PGWUI_Server
-
-
-#
-# PGWUI configuration
-#
-
-# Postgres client configuration.
-
-# Both pgwui.pg_host and pgwui.pg_port are optional;
-# they default to the Unix PG socket and the default Postgres port.
-# An empty string for host means use the unix socket.
-pgwui.pg_host =
-pgwui.pg_port = 5432
-
-# There are occasions when PGWUI uses a default database.  (optional)
-pgwui.default_db = template1
-
-# What PGWUI modules to use.
-pyramid.includes =
-    pgwui_logout
-    pgwui_upload
-
-# Whether or not to change the db content.  (required)
-pgwui.dry_run = False
-
-# Routing
-
-# Routes are what call up specific pages.  They are the
-# part of the URL which comes after the http://example.com.
-#
-# All routes should probably begin with a "/" character but
-# if they do not a "/" will be automatically prepended.
-#
-# A full URL may be given as a route.  The is useful for redirecting
-# to other sites.
-#
-# For more information on route syntax see:
-# https://docs.pylonsproject.org/projects/pyramid/en/master/narr/urldispatch.html#route-pattern-syntax
-
-# A prefix for all routes.  (optional)  If the prefix is "/a/b/c" then
-# all URLs will begin with something like: http://example.com/a/b/c
-# The default is no prefix.
-# pgwui.route_prefix =
-
-# Overriding routes of specific PGWUI components
-
-# The syntax is "name" = "route", one per line.  The "name" is the
-# name of the PGWUI component.  "route" is the route to use to access
-# the component.  So to access the logout page at
-# http://example.com/logmeout the line would be: logout = /logmeout
-#
-# Overriding routes is optional.
-#
-# The default for some PGWUI components are:
-# pgwui.routes =
-#   logout = /logmeout
-#   upload = /put-in
-
-# Settings validation
-
-# Whether or not to validate the session.secret setting.  (optional)
-# session.secret must be valid to detect Cross-Site Request Forgery (CSRF)
-# vulnerabilties.  Validation is on by default.
-# pgwui.validate_hmac = True
-
-# Take uploaded column headings literally?
-# The available choices are:
-#   on   The file's column headings, as typed, are the table's column names.
-#   off  The file's column headings are case-insensitive.
-#   ask  Put a "Take Column Headings Literally" checkbox on the upload screen.
-# Optional setting.  The default is "off".
-#
-# Caution: Non-ASCII column names, particularly in the Turkish locale,
-# are not guaranteed to be case-insensitive.
-pgwui.literal_column_headings = off
-
-
-#
-# Pyramid configuration
-# https://docs.pylonsproject.org/projects/pyramid/en/latest/narr/environment.html
-#
-pyramid.reload_templates = False
-pyramid.debug_authorization = False
-pyramid.debug_notfound = False
-pyramid.debug_routematch = False
-pyramid.default_locale_name = en
-
-
-#
-# Beaker session management configuration
-# https://beaker.readthedocs.io/en/latest/configuration.html
-#
-session.type = memory
-session.lock_dir = /var/lock/pgwui_server
-# Remove cookie in browser on browser close.
-session.cookie_expires = True
-session.key = pgwui_server
-# HMAC secret
-#session.secret = xxxxxxrandomstring40characterslongxxxxxx
-# Send cookie only over https
-session.secure = True
-# Sessions timeout after an hour if unused.
-session.timeout = 3600
-# Pyramid sends cookies for exception pages
-session.cookie_on_exception = True
-
-
-#
-# Mako templates
-#
-#mako.strict_undefined = True
-
-
-###
-# wsgi server configuration
-###
-
-[server:main]
-# When using a standalone WSGI server like uwsgi or Apache's mod_wsgi
-# use the pgwui_server's WSGI.
-#use = egg:PGWUI_Server
-
-# Use waitress as the webserver and configure a reverse-proxy to the network.
-#
-# An Nginx (https://www.nginx.org) reverse-proxy configuration might look like:
-#
-#     location / {
-#         proxy_pass       http://localhost:6543;
-#         proxy_set_header Host      $host;
-#         proxy_set_header X-Real-IP $remote_addr;
-#     }
-#
-use = egg:waitress#main
-
-# A value for "host" of "*", instead of "127.0.0.1", exposes the
-# application to the network.  Unless you trust everyone and every
-# device that might access your network this will, at minimum, expose
-# what could be highly sensitive information.  See the documentation
-# for more secure alternatives.
-host = 127.0.0.1
-port = 6543
-
-
-###
-# logging configuration
-# http://docs.pylonsproject.org/projects/pyramid/en/latest/narr/logging.html
-###
-
-[loggers]
-keys = root, pgwui_server, pgwui_upload
-
-[handlers]
-keys = syslog, console
-
-[formatters]
-keys = generic
-
-[logger_root]
-level = WARN
-handlers = console
-
-[handler_syslog]
-class = logging.handlers.SysLogHandler
-args = ('/dev/log',)
-level = NOTSET
-formatter = generic
-
-[handler_console]
-class = StreamHandler
-args = (sys.stderr,)
-level = NOTSET
-formatter = generic
-
-[formatter_generic]
-format = %(asctime)s %(levelname)-5.5s [%(name)s][%(threadName)s] %(message)s
-
-# These sections don't do anything as given.  They are provided so that
-# logging can be customized per pgwui package.  You may want to add
-# "propagate = False" lines to avoid duplicate logging if you customize
-# them to emit log messages.
-
-[logger_pgwui_server]
-level = INFO
-handlers =
-qualname = pgwui_server
-
-[logger_pgwui_upload]
-level = INFO
-handlers =
-qualname = pgwui_upload