|
Size: 1792
Comment: page creation
|
Size: 5030
Comment: converted to 1.6 markup
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| ## ## Note, the url of this page is linked to in the programs so the name of this page should ## not be changed without taking this into account. ## |
|
| Line 4: | Line 8: |
| * [https://papio.biology.duke.edu/phpPgadmin/ phpPgAdmin] -- A web interface to the [http://www.postgresql.org/ PostgreSQL] database which stores all the Babase data. The authoritative Babase data is kept on the {{{papio.biology.duke.edu PostgreSQL server}}}, in the {{{babase}}} database, in the {{{babase}}} schema. ([http://phppgadmin.sourceforge.net documentation]) | * [[https://papio.biology.duke.edu/phpPgAdmin/|phpPgAdmin]] -- A web interface to the [[http://www.postgresql.org/|PostgreSQL]] database which stores all the Babase data. The authoritative Babase data is kept on the {{{papio.biology.duke.edu PostgreSQL server}}}, in the {{{babase}}} database, in the {{{babase}}} schema. ([[http://phppgadmin.sourceforge.net|documentation]]) |
| Line 8: | Line 13: |
| * [https://papio.biology.duke.edu/programs/wwwdiff/ wwwdiff] -- Compare 2 files. Used for proofing; the procedure is to have two different people enter the same data and then compare the results. ([https://papio.biology.duke.edu/babase_system.html#Wwwdiff documentation]) * [https://papio.biology.duke.edu/programs/upload/ upload] -- Upload a tab delimited text file into the database. Useful because it will upload into views as well as tables. Several Babase datasets are updated using this program. ([https://papio.biology.duke.edu/babase_system.html#Upload documentation]) * [https://papio.biology.duke.edu/programs/upcen/ upcen] -- Upload a tab delimited text file into the Census table. ([https://papio.biology.duke.edu/babase_system.html#Upcen documentation]) * [https://papio.biology.duke.edu/programs/psionload/ psionload] -- Upload raw Psion data into Babase. ([https://papio.biology.duke.edu/babase_system#Psionload documentation]) * [https://papio.biology.duke.edu/ranker/ranker.jnlp ranker] -- The Ranker program; please refer to its [:RankerProgram:documentation] for prerequisites and instructions on how to launch it. * [https://papio.biology.duke.edu/programs/logout logout] -- Logout from the Babase program suite. ([https://papio.biology.duke.edu/babase_system#Logout documentation]) |
* [[https://papio.biology.duke.edu/programs/wwwdiff/|wwwdiff]] -- Compare 2 files. Used for proofing; the procedure is to have two different people enter the same data and then compare the results. ([[http://papio.biology.duke.edu/babase_system.html#Wwwdiff|documentation]]) * [[https://papio.biology.duke.edu/programs/upload/|upload]] -- Upload a tab delimited text file into the database. Useful because it will upload into views as well as tables. Several Babase datasets are updated using this program. ([[http://papio.biology.duke.edu/babase_system.html#Upload|documentation]]) * [[https://papio.biology.duke.edu/programs/upcen/|upcen]] -- Upload a tab delimited text file into the Census table. ([[http://papio.biology.duke.edu/babase_system.html#Upcen|documentation]]) * [[https://papio.biology.duke.edu/programs/psionload/|psionload]] -- Upload raw Psion data into Babase. ([[http://papio.biology.duke.edu/babase_system#Psionload|documentation]]) * [[https://papio.biology.duke.edu/programs/upmpi/|upmpi]] -- Upload a tab delimited text file into the MPI tables. ([[http://papio.biology.duke.edu/babase_system/Upmpi|documentation]]) * [[https://papio.biology.duke.edu/programs/updart/?darttype=log|updart Darting Logistic Data]] -- Upload a tab delimited text file into the darting logistic related tables. ([[http://papio.biology.duke.edu/babase_system.html#Updart|documentation]], [[http://papio.biology.duke.edu/babase_system.html#updart-log|logistic specific documentation]]) * [[https://papio.biology.duke.edu/programs/updart/?darttype=morpho|updart Darting Morphology Data]] -- Upload a tab delimited text file into the darting morphology related tables. ([[http://papio.biology.duke.edu/babase_system.html#Updart|documentation]], [[http://papio.biology.duke.edu/babase_system.html#updart-morpho|morphology specific documentation]]) * [[https://papio.biology.duke.edu/programs/updart/?darttype=physio|updart Darting Physiology Data]] -- Upload a tab delimited text file into the darting physiology related tables. ([[http://papio.biology.duke.edu/babase_system.html#Updart|documentation]], [[http://papio.biology.duke.edu/babase_system.html#updart-dphys|physiology specific documentation]]) * [[https://papio.biology.duke.edu/programs/updart/?darttype=samp|updart Darting Sample Data]] -- Upload a tab delimited text file into the darting physical sample related tables. ([[http://papio.biology.duke.edu/babase_system.html#Updart|documentation]], [[http://papio.biology.duke.edu/babase_system.html#updart-dsamp|sample specific documentation]]) * [[https://papio.biology.duke.edu/programs/updart/?darttype=teeth|updart Darting Tooth Data]] -- Upload a tab delimited text file into the darting tooth related tables. ([[http://papio.biology.duke.edu/babase_system.html#Updart|documentation]], [[http://papio.biology.duke.edu/babase_system.html#updart-teeth|tooth specific documentation]]) * [[https://papio.biology.duke.edu/programs/updart/?darttype=testes_arc|updart Darting Testes Circumference Data]] -- Upload a tab delimited text file into the darting testes circumference related tables. (TESTES_ARC) ([[http://papio.biology.duke.edu/babase_system.html#Updart|documentation]], [[http://papio.biology.duke.edu/babase_system.html#updart-testes|testes specific documentation]]) * [[https://papio.biology.duke.edu/programs/updart/?darttype=testes_diam|updart Darting Testes Diameter Data]] -- Upload a tab delimited text file into the darting testes diameter related tables. (TESTES_DIAM) ([[http://papio.biology.duke.edu/babase_system.html#Updart|documentation]], [[http://papio.biology.duke.edu/babase_system.html#updart-testes|testes specific documentation]]) * [[https://papio.biology.duke.edu/programs/uptick|Darting Tick Data]] -- Upload a tab delimited text file into the darting tick and other parasites related tables. ([[http://papio.biology.duke.edu/babase_system.html#Uptick|documentation]]) * [[https://papio.biology.duke.edu/ranker/ranker.jnlp|ranker]] -- The Ranker program; please refer to its [[RankerProgram|documentation]] for prerequisites and instructions on how to launch it. * [[https://papio.biology.duke.edu/programs/logout|logout]] -- Logout from the Babase program suite. ([[http://papio.biology.duke.edu/babase_system#Logout|documentation]]) |
Programs
Generic Programs
-- A web interface to the PostgreSQL database which stores all the Babase data. The authoritative Babase data is kept on the papio.biology.duke.edu PostgreSQL server, in the babase database, in the babase schema. (documentation)
Babase's Bespoke Programs
-- Compare 2 files. Used for proofing; the procedure is to have two different people enter the same data and then compare the results. (documentation)
-- Upload a tab delimited text file into the database. Useful because it will upload into views as well as tables. Several Babase datasets are updated using this program. (documentation)
-- Upload a tab delimited text file into the Census table. (documentation)
-- Upload raw Psion data into Babase. (documentation)
-- Upload a tab delimited text file into the MPI tables. (documentation)
-- Upload a tab delimited text file into the darting logistic related tables. (documentation, logistic specific documentation)
updart Darting Morphology Data
-- Upload a tab delimited text file into the darting morphology related tables. (documentation, morphology specific documentation)
updart Darting Physiology Data
-- Upload a tab delimited text file into the darting physiology related tables. (documentation, physiology specific documentation)
-- Upload a tab delimited text file into the darting physical sample related tables. (documentation, sample specific documentation)
-- Upload a tab delimited text file into the darting tooth related tables. (documentation, tooth specific documentation)
updart Darting Testes Circumference Data
-- Upload a tab delimited text file into the darting testes circumference related tables. (TESTES_ARC) (documentation, testes specific documentation)
updart Darting Testes Diameter Data
-- Upload a tab delimited text file into the darting testes diameter related tables. (TESTES_DIAM) (documentation, testes specific documentation)
-- Upload a tab delimited text file into the darting tick and other parasites related tables. (documentation)
-- The Ranker program; please refer to its documentation for prerequisites and instructions on how to launch it.
-- Logout from the Babase program suite. (documentation)