Differences between revisions 13 and 32 (spanning 19 versions)
Revision 13 as of 2011-01-15 07:30:49
Size: 2624
Editor: KarlPinc
Comment: Fix moinmail revision history url.
Revision 32 as of 2025-01-03 19:17:21
Size: 2851
Editor: KarlPinc
Comment: Moinmail is gone
Deletions are marked like this. Additions are marked like this.
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All Babase software and documentation is [http://opensource.org/docs/osd Open Source] [http://www.gnu.org/philosophy/free-sw.html Free Software] available to the public, presently licensed under the GNU [http://www.gnu.org/licenses/licenses.html#GPL GPL] version 3.0 or later. All Babase software and documentation is [[http://opensource.org/docs/osd|Open Source]] [[http://www.gnu.org/philosophy/free-sw.html|Free Software]] available to the public, presently licensed under the GNU [[http://www.gnu.org/licenses/licenses.html#GPL|GPL]] version 3.0 or later.
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Examine [http://papio.biology.duke.edu/repos/babase/COPYING the licensing terms]
attachment:gplv3-88x31.png
Examine [[http://papio.biology.duke.edu/repos/babase/COPYING|the licensing terms]]  {{attachment:gplv3-88x31.png}}
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The Amboseli Baboon Research Project runs [[WhatIsBabase|Babase]] on Linux. Any Unix based OS, including Mac OS/X should run Babase with little difficulty. Babase will probably run on Microsoft Windows as well. All components of the runtime environment are cross platform but the build environment is Unix based so it will probably take something like [[http://cygwin.com/|Cygwin]] to install Babase on Microsoft Windows.
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The Amboseli Baboon Research Project runs [:WhatIsBabase:Babase] on Linux. Any Unix based OS, including Mac OS/X should run Babase with little difficulty. Babase will probably run on Microsoft Windows as well. All components of the runtime environment are cross platform but the build environment is Unix based so it will probably take something like [http://cygwin.com/ Cygwin] to install Babase on Microsoft Windows.  * The posted [[http://papio.biology.duke.edu/src/babase/VERSION|version]]
 * Read [[http://papio.biology.duke.edu/src/babase/changes|the revision log]]
 * Browse the [[http://papio.biology.duke.edu/darcsweb/darcsweb.cgi?r=babase;a=tree|source code revision repository]]
 * Download [[http://papio.biology.duke.edu/src/babase.tgz|a tar archive]] of the source
 * Read [[http://papio.biology.duke.edu/repos/darcs/babase/db/README|the README]]
 * Checkout the [[http://www.darcs.net/|darcs]] revision archive from the repository at http://papio.biology.duke.edu/repos/darcs/babase, or just visit it with your web browser. (Code contributors using ssh should take care to use --ssh-cm or the Duke firewall may ban your IP address. Code contributors attempting to checkout the repository via http may need to contact Duke technical support to avoid being banned by the Duke firewall.)
 * The [[RankerProgram|ranker program]] has it's [[attachment:RankerProgram/BabaseRanker-1.1.tgz|source code]] attached to it's wiki page
 * Browse [[https://papio.biology.duke.edu/repos/darcs/babase/|the source]] (or browse the source code repository web interface, above, for a better browsing experience)
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 * The posted [http://papio.biology.duke.edu/src/babase/VERSION version]
 * Read [http://papio.biology.duke.edu/src/babase/changes the revision log]
 * Browse the [http://papio.biology.duke.edu/cgi-bin/darcs.cgi/babase source code revision repository]
 * Download [http://papio.biology.duke.edu/src/babase.tgz a tar archive] of the source
 * Read [http://papio.biology.duke.edu/repos/babase/db/README the README]
 * Checkout the [http://www.darcs.net/ darcs] (version 1.0) revision archive from the repository at [http://papio.biology.duke.edu/repos/babase], or just visit it with your web browser. (Code contributors using [http://www.darcs.net/ darcs] version 2 or later should take care to create a compatible repository. Code contributors using ssh should take care to use --ssh-cm or the Duke firewall may ban your IP address. Code contributors attempting to checkout the repository via http may need to contact Duke technical support to avoid being banned by the Duke firewall.)
 * The [:RankerProgram:ranker program] has it's [attachment:RankerProgram/currentbabase.zip source code] attached to it's wiki page
 * Browse [http://papio.biology.duke.edu/repos/babase/ the source] (or browse the source code repository web interface, above, for a better browsing experience)
We have [[https://papio.biology.duke.edu/repos/|2 collections of code repositories]], [[http://papio.biology.duke.edu/darcsweb/|one for darcs]], and [[http://papio.biology.duke.edu/gitweb/|another for git]].
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== moinmail ==
Moinmail is a framework for administering a system
that automatically generates mail at regular intervals
using the moinmoin wiki as the management interface.
It was developed to support Babase but is completely independent.
== SCI ==
This is not actually a "program", but a series of scripts in R and SQL. This repo shows how to calculate social connectedness index (SCI) values from the data in Babase.
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 * Checkout the moinmail darcs 1.0 code repository at [http://papio.biology.duke.edu/repos/moinmail], or just visit it with your browser.
 * Browse the [http://papio.biology.duke.edu/cgi-bin/darcs.cgi/moinmail moinmail revision history].
For a brief period of time, this repo was maintained here on this server. Before long, the people actually using and modifying the repo started their own version on [[https://github.com|GitHub]]. So the "official" version is no longer here. To see the latest version of the code, see the [[https://github.com/amboseli/ramboseli/blob/master/documentation/sociality-indices.md|GitHub Repo]].

Software

All Babase software and documentation is Open Source Free Software available to the public, presently licensed under the GNU GPL version 3.0 or later.

Examine the licensing terms gplv3-88x31.png

Babase

The Amboseli Baboon Research Project runs Babase on Linux. Any Unix based OS, including Mac OS/X should run Babase with little difficulty. Babase will probably run on Microsoft Windows as well. All components of the runtime environment are cross platform but the build environment is Unix based so it will probably take something like Cygwin to install Babase on Microsoft Windows.

We have 2 collections of code repositories, one for darcs, and another for git.

SCI

This is not actually a "program", but a series of scripts in R and SQL. This repo shows how to calculate social connectedness index (SCI) values from the data in Babase.

For a brief period of time, this repo was maintained here on this server. Before long, the people actually using and modifying the repo started their own version on GitHub. So the "official" version is no longer here. To see the latest version of the code, see the GitHub Repo.

SourceCode (last edited 2025-01-03 19:17:21 by KarlPinc)

Wiki content based upon work supported by the National Science Foundation under Grant Nos. 0323553 and 0323596. Any opinions, findings, conclusions or recommendations expressed in this material are those of the wiki contributor(s) and do not necessarily reflect the views of the National Science Foundation.