Differences between revisions 16 and 29 (spanning 13 versions)
⇤ ← Revision 16 as of 2012-02-07 19:17:17 →
Size: 2748
Editor: localhost
Comment: converted to 1.6 markup
← Revision 29 as of 2024-10-25 15:58:18 → ⇥
Size: 3439
Editor: KarlPinc
Comment: Update for papio migration; mention git repo, update SCI section to reference github
Deletions are marked like this. Additions are marked like this.
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Examine [[http://papio.biology.duke.edu/repos/babase/COPYING|the licensing terms]]
{{attachment:gplv3-88x31.png}}		 Examine [[http://papio.biology.duke.edu/repos/babase/COPYING|the licensing terms]]  {{attachment:gplv3-88x31.png}}
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 * Browse the [[http://papio.biology.duke.edu/cgi-bin/darcs.cgi/babase|source code revision repository]]  * Browse the [[http://papio.biology.duke.edu/darcsweb/darcsweb.cgi?r=babase;a=tree|source code revision repository]]
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 * Checkout the [[http://www.darcs.net/|darcs]] (version 1.0) revision archive from the repository at [[http://papio.biology.duke.edu/repos/babase]], or just visit it with your web browser. (Code contributors using [[http://www.darcs.net/|darcs]] version 2 or later should take care to create a compatible repository. Code contributors using ssh should take care to use --ssh-cm or the Duke firewall may ban your IP address. Code contributors attempting to checkout the repository via http may need to contact Duke technical support to avoid being banned by the Duke firewall.)
 * The [[RankerProgram|ranker program]] has it's [[attachment:RankerProgram/BabaseRanker-1.0.tgz|source code]] attached to it's wiki page
 * Browse [[http://papio.biology.duke.edu/repos/babase/|the source]] (or browse the source code repository web interface, above, for a better browsing experience)		  * Checkout the [[http://www.darcs.net/|darcs]] revision archive from the repository at http://papio.biology.duke.edu/repos/babase, or just visit it with your web browser. (Code contributors using ssh should take care to use --ssh-cm or the Duke firewall may ban your IP address. Code contributors attempting to checkout the repository via http may need to contact Duke technical support to avoid being banned by the Duke firewall.)
 * The [[RankerProgram|ranker program]] has it's [[attachment:RankerProgram/BabaseRanker-1.1.tgz|source code]] attached to it's wiki page
 * Browse [[https://papio.biology.duke.edu/repos/babase/|the source]] (or browse the source code repository web interface, above, for a better browsing experience)

We have 2 collections of code repositories, [[http://papio-test.biology.duke.edu/darcsweb/|one for darcs]], and [[http://papio-test.biology.duke.edu/gitweb/|another for git]].
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Moinmail is a framework for administering a system
that automatically generates mail at regular intervals
using the moinmoin wiki as the management interface.
It was developed to support Babase but is completely independent.		 Moinmail is a framework for administering a system that automatically generates mail at regular intervals using the moinmoin wiki as the management interface. It was developed to support Babase but is completely independent.
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 * Checkout the moinmail darcs 1.0 code repository at [[http://papio.biology.duke.edu/repos/moinmail]], or just visit it with your browser.
 * Browse the [[http://papio.biology.duke.edu/cgi-bin/darcs.cgi/moinmail|moinmail revision history]].		  * Checkout the moinmail darcs 1.0 code repository at http://papio.biology.duke.edu/repos/moinmail, or just visit it with your browser.
 * Browse the [[http://papio.biology.duke.edu/darcsweb/moinmail|moinmail revision history]].
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(The above moinmail links are broken. This needs to be corrected. Someday.)

== SCI ==
This is not actually a "program", but a series of scripts in R and SQL. This repo shows how to calculate social connectedness index (SCI) values from the data in Babase.

For a brief period of time, this repo was maintained here on this server. Before long, the people actually using and modifying the repo started their own version on [[https://github.com|GitHub]]. So the "official" version is no longer here. To see the latest version of the code, see the [[https://github.com/amboseli/ramboseli/blob/master/documentation/sociality-indices.md|GitHub Repo]].

Software

All Babase software and documentation is Open Source Free Software available to the public, presently licensed under the GNU GPL version 3.0 or later.

Examine the licensing terms gplv3-88x31.png

Babase

The Amboseli Baboon Research Project runs Babase on Linux. Any Unix based OS, including Mac OS/X should run Babase with little difficulty. Babase will probably run on Microsoft Windows as well. All components of the runtime environment are cross platform but the build environment is Unix based so it will probably take something like Cygwin to install Babase on Microsoft Windows.

We have 2 collections of code repositories, one for darcs, and another for git.

moinmail

Moinmail is a framework for administering a system that automatically generates mail at regular intervals using the moinmoin wiki as the management interface. It was developed to support Babase but is completely independent.

(The above moinmail links are broken. This needs to be corrected. Someday.)

SCI

This is not actually a "program", but a series of scripts in R and SQL. This repo shows how to calculate social connectedness index (SCI) values from the data in Babase.

For a brief period of time, this repo was maintained here on this server. Before long, the people actually using and modifying the repo started their own version on GitHub. So the "official" version is no longer here. To see the latest version of the code, see the GitHub Repo.

SourceCode (last edited 2025-01-03 19:17:21 by KarlPinc)

Wiki content based upon work supported by the National Science Foundation under Grant Nos. 0323553 and 0323596. Any opinions, findings, conclusions or recommendations expressed in this material are those of the wiki contributor(s) and do not necessarily reflect the views of the National Science Foundation.