Differences between revisions 2 and 20 (spanning 18 versions)
Revision 2 as of 2009-11-24 18:46:38
Size: 1978
Editor: KarlPinc
Comment: Add upmpi.
Revision 20 as of 2024-10-25 15:50:23
Size: 2060
Editor: KarlPinc
Comment: Update for papio migration; remove photo organizer and wwwdiff and all the upload programs replaced by views, add copy schema and bulk upload
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## Note, the url of this page is linked to in the programs so the name of this page should
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 * [https://papio.biology.duke.edu/phpPgadmin/ phpPgAdmin] -- A web interface to the [http://www.postgresql.org/ PostgreSQL] database which stores all the Babase data. The authoritative Babase data is kept on the {{{papio.biology.duke.edu PostgreSQL server}}}, in the {{{babase}}} database, in the {{{babase}}} schema. ([http://phppgadmin.sourceforge.net documentation])  * [[https://papio.biology.duke.edu/phpPgAdmin/|phpPgAdmin]]
  
-- A web interface to the [[http://www.postgresql.org/|PostgreSQL]] database which stores all the Babase data. The authoritative Babase data is kept on the {{{papio.biology.duke.edu PostgreSQL server}}}, in the {{{babase}}} database, in the {{{babase}}} schema. ([[http://phppgadmin.sourceforge.net|documentation]])
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 * [https://papio.biology.duke.edu/programs/wwwdiff/ wwwdiff] -- Compare 2 files. Used for proofing; the procedure is to have two different people enter the same data and then compare the results. ([https://papio.biology.duke.edu/babase_system.html#Wwwdiff documentation])
 * [https://papio.biology.duke.edu/programs/upload/ upload] -- Upload a tab delimited text file into the database. Useful because it will upload into views as well as tables. Several Babase datasets are updated using this program. ([https://papio.biology.duke.edu/babase_system.html#Upload documentation])
 * [https://papio.biology.duke.edu/programs/upcen/ upcen] -- Upload a tab delimited text file into the Census table. ([https://papio.biology.duke.edu/babase_system.html#Upcen documentation])
 * [https://papio.biology.duke.edu/programs/psionload/ psionload] -- Upload raw Psion data into Babase. ([https://papio.biology.duke.edu/babase_system#Psionload documentation])
 * [https://papio.biology.duke.edu/programs/upmpi/ upmpi] -- Upload a tab delimited text file into the MPI tables. ([https://papio.biology.duke.edu/babase_system/Upmpi documentation])
 * [https://papio.biology.duke.edu/ranker/ranker.jnlp ranker] -- The Ranker program; please refer to its [:RankerProgram:documentation] for prerequisites and instructions on how to launch it.
 * [https://papio.biology.duke.edu/programs/logout logout] -- Logout from the Babase program suite. ([https://papio.biology.duke.edu/babase_system#Logout documentation])
 * [[https://papio.biology.duke.edu/programs/upload/|upload]]
    -- Upload a delimited text file into the database. Useful because it will upload into views as well as tables. Several Babase datasets are updated using this program. ([[https://papio.biology.duke.edu/babase_system.html#Upload|documentation]])
 * [[https://papio.biology.duke.edu/programs/copy|copy schema]]
    -- Copy a Schema Between Databases ([[https://papio-test.biology.duke.edu/gitweb/?p=pgwui_copy;a=blob_plain;f=README.rst;hb=HEAD|documentation]])
 * [[https://papio.biology.duke.edu/programs/bulk_upload|bulk upload]]
    -- Upload multiple files into multiple tables or views, in an all-or-nothing way. ([[https://papio.biology.duke.edu/gitweb/?p=pgwui_bulk_upload;a=blob_plain;f=README.rst;hb=HEAD|documentation]])
 * [[https://papio.biology.duke.edu/programs/upcen|update census]]
    -- Upload census-formatted data into the CENSUS table. ([[https://papio.biology.duke.edu/babase_system_html/Data-Maintenance-Programs.html#Upcen|documentation]])
 * [[https://papio.biology.duke.edu/ranker/ranker.jnlp|ranker]]
    -- The Ranker program; please refer to its [[RankerProgram|documentation]] for prerequisites and instructions on how to launch it.
 * [[https://papio.biology.duke.edu/programs/logout|logout]]
    -- Logout from the Babase program suite. ([[https://papio.biology.duke.edu/babase_system.html#Logout|documentation]])

Programs

Generic Programs
  • phpPgAdmin

    • -- A web interface to the PostgreSQL database which stores all the Babase data. The authoritative Babase data is kept on the papio.biology.duke.edu PostgreSQL server, in the babase database, in the babase schema. (documentation)

Babase's Bespoke Programs

ProgramLinks (last edited 2024-12-11 20:18:34 by JakeGordon)

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