Differences between revisions 7 and 21 (spanning 14 versions)
Revision 7 as of 2010-05-11 15:55:25
Size: 3137
Editor: KarlPinc
Comment: Remove https from documentation links.
Revision 21 as of 2024-12-11 20:18:34
Size: 2059
Editor: JakeGordon
Comment:
Deletions are marked like this. Additions are marked like this.
Line 8: Line 8:
 * [https://papio.biology.duke.edu/phpPgAdmin/ phpPgAdmin] -- A web interface to the [http://www.postgresql.org/ PostgreSQL] database which stores all the Babase data. The authoritative Babase data is kept on the {{{papio.biology.duke.edu PostgreSQL server}}}, in the {{{babase}}} database, in the {{{babase}}} schema. ([http://phppgadmin.sourceforge.net documentation])  * [[https://papio.biology.duke.edu/phpPgAdmin/|phpPgAdmin]]
  
-- A web interface to the [[http://www.postgresql.org/|PostgreSQL]] database which stores all the Babase data. The authoritative Babase data is kept on the {{{papio.biology.duke.edu PostgreSQL server}}}, in the {{{babase}}} database, in the {{{babase}}} schema. ([[http://phppgadmin.sourceforge.net|documentation]])
Line 12: Line 13:
 * [https://papio.biology.duke.edu/programs/wwwdiff/ wwwdiff] -- Compare 2 files. Used for proofing; the procedure is to have two different people enter the same data and then compare the results. ([http://papio.biology.duke.edu/babase_system.html#Wwwdiff documentation])
 * [https://papio.biology.duke.edu/programs/upload/ upload] -- Upload a tab delimited text file into the database. Useful because it will upload into views as well as tables. Several Babase datasets are updated using this program. ([http://papio.biology.duke.edu/babase_system.html#Upload documentation])
 * [https://papio.biology.duke.edu/programs/upcen/ upcen] -- Upload a tab delimited text file into the Census table. ([http://papio.biology.duke.edu/babase_system.html#Upcen documentation])
 * [https://papio.biology.duke.edu/programs/psionload/ psionload] -- Upload raw Psion data into Babase. ([http://papio.biology.duke.edu/babase_system#Psionload documentation])
 * [https://papio.biology.duke.edu/programs/upmpi/ upmpi] -- Upload a tab delimited text file into the MPI tables. ([http://papio.biology.duke.edu/babase_system/Upmpi documentation])
 * [https://papio.biology.duke.edu/programs/updart/?darttype=log updart Darting Logistic Data] -- Upload a tab delimited text file into the darting logistic related tables. ([http://papio.biology.duke.edu/babase_system.html#Updart documentation])
 * [https://papio.biology.duke.edu/programs/updart/?darttype=morpho updart Darting Morphology Data] -- Upload a tab delimited text file into the darting morphology related tables. ([http://papio.biology.duke.edu/babase_system.html#Updart documentation])
 * [https://papio.biology.duke.edu/programs/updart/?darttype=physio updart Darting Physiology Data] -- Upload a tab delimited text file into the darting physiology related tables. ([http://papio.biology.duke.edu/babase_system.html#Updart documentation])
 * [https://papio.biology.duke.edu/programs/updart/?darttype=samp updart Darting Sample Data] -- Upload a tab delimited text file into the darting physical sample related tables. ([http://papio.biology.duke.edu/babase_system.html#Updart documentation])
 * [https://papio.biology.duke.edu/ranker/ranker.jnlp ranker] -- The Ranker program; please refer to its [:RankerProgram:documentation] for prerequisites and instructions on how to launch it.
 * [https://papio.biology.duke.edu/programs/logout logout] -- Logout from the Babase program suite. ([http://papio.biology.duke.edu/babase_system#Logout documentation])
 * [[https://papio.biology.duke.edu/programs/upload|upload]]
    -- Upload a delimited text file into the database. Useful because it will upload into views as well as tables. Several Babase datasets are updated using this program. ([[https://papio.biology.duke.edu/babase_system.html#Upload|documentation]])
 * [[https://papio.biology.duke.edu/programs/copy|copy schema]]
    -- Copy a Schema Between Databases ([[https://papio-test.biology.duke.edu/gitweb/?p=pgwui_copy;a=blob_plain;f=README.rst;hb=HEAD|documentation]])
 * [[https://papio.biology.duke.edu/programs/bulk_upload|bulk upload]]
    -- Upload multiple files into multiple tables or views, in an all-or-nothing way. ([[https://papio.biology.duke.edu/gitweb/?p=pgwui_bulk_upload;a=blob_plain;f=README.rst;hb=HEAD|documentation]])
 * [[https://papio.biology.duke.edu/programs/upcen|update census]]
    -- Upload census-formatted data into the CENSUS table. ([[https://papio.biology.duke.edu/babase_system_html/Data-Maintenance-Programs.html#Upcen|documentation]])
 * [[https://papio.biology.duke.edu/ranker/ranker.jnlp|ranker]]
    -- The Ranker program; please refer to its [[RankerProgram|documentation]] for prerequisites and instructions on how to launch it.
 * [[https://papio.biology.duke.edu/programs/logout|logout]]
    -- Logout from the Babase program suite. ([[https://papio.biology.duke.edu/babase_system.html#Logout|documentation]])

Programs

Generic Programs
  • phpPgAdmin

    • -- A web interface to the PostgreSQL database which stores all the Babase data. The authoritative Babase data is kept on the papio.biology.duke.edu PostgreSQL server, in the babase database, in the babase schema. (documentation)

Babase's Bespoke Programs

ProgramLinks (last edited 2024-12-11 20:18:34 by JakeGordon)

Wiki content based upon work supported by the National Science Foundation under Grant Nos. 0323553 and 0323596. Any opinions, findings, conclusions or recommendations expressed in this material are those of the wiki contributor(s) and do not necessarily reflect the views of the National Science Foundation.