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| This is the [http://papio.biology.duke.edu/babase_system_html/ Babase] Wiki. The Babase project uses this wiki to document tips and tricks for using Babase and to otherwise collaborate, share documents, etc. | = Babase -- The Wiki = <<FullSearch>><<Anchor(mainmenu)>><<TableOfContents>> |
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| If you are one of the following people, please give yourselves the username listed, with capitalization as listed (you can also have an alias of your choice, i.e. altj). Then edit this page and take yourself off the list. Thank you.: | == Using Babase == === Accessing Data === * [[https://papio.biology.duke.edu/phpPgAdmin/|Access the Database Via phpPgAdmin]] (You know you want to!) * [[WorkingDataDrafts|Working Data Drafts]] - Before using any of the data linked or referred to on this page, please contact the Babase Administrator |
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| ||Person||Username|| ||Jeanne Altmann||JeanneAltmann|| ||Susan Alberts||SusanAlberts|| ||Cathrine Markham||CathrineMarkham|| ||Leah Gerber||LeahGerber|| |
=== Learning === * [[DukeAuthentication|Accessing Duke's Systems and Logging In]] * [[BabaseTrainingCourse|Babase Training Course]] * [[GettingStartedWithBabase|Getting Started With Babase]] * [[SQLCourseLink|SQL Internet Resources]] * [[SQL_Language|SQL Language for Babase]] * [[TheBabaseWiki|The Babase Wiki]] -- The Babase website, you can help improve it! * [[BabaseGlossary|Babase Glossary v.1]] * [[BabaseHelp|Babase Help]] -- Other help links * [[BestPractices|Babase Best Practices]] -- Tips and suggestions to keep in mind while using the database * [[BabaseQuiz|Babase Quiz]] -- New Users must take this quiz before starting work with babase. See Niki or Jake for information |
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| Anybody can view the pages in this wiki. Anybody can make themselves a login, but having a login grants you no additional privliges. Only the users in the BabaseWikiAdminGroup can grant you access to edit this wiki. They do that by adding your name to the BabaseWikiEditorsGroup. If they want to they can read HelpOnAccessControlLists and make more groups and have finer control over who can do what. KarlPinc can reconfigure the wiki to support other security policies if we want to go there. | === Reference Material === * [[WhatIsBabase|About the Babase Software Project]] * [[DocumentationLinks#techspecs|The Babase System Technical Specifications]] ([[https://papio.biology.duke.edu/babase_system.html|Web, un-paginated]]) ([[https://papio.biology.duke.edu/babase_system_html/|Web, paginated]]) * [[DocumentationLinks#pocketref|The Babase Pocket Reference]] ([[https://papio.biology.duke.edu/pocket_reference.pdf|PDF]]) ([[https://papio.biology.duke.edu/pocket_reference.html|Web]]) * [[DocumentationLinks#erdiagrams|Entity Relationship Diagrams]] ([[https://papio.biology.duke.edu/diagrams/|List]]) * [[BestPractices|Babase Best Practices]] * Babase user [[FAQs]] * [[BabasePending|Documentation for schemas other than babase]] * [[DocumentationLinks#otherdocumentation|Other Babase Documentation]] - Wish List, To Do's Etc * [[HerbariumRecords|Baboon Foods and the ABRP Herbarium]] |
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| When making yourself a login it is best to choose a WikiName (like FirstnameLastname) as username to get your changes and signatures link back to your WikiHomepage. | === Data Management === * [[DataManagement|Data Management Tasks]] - primarily for use by data managers * [[https://papio.biology.duke.edu/po/login.php|Photo Organizer]] - a photo repository (currently being sunsetted) == Status of Babase Datasets == <<Include(DatasetStatusTable)>>[[DatasetStatus|Dataset status detail]] == Source Code == All of the Babase source code is freely available [[SourceCode|right here]]. == Acknowledgments == We gratefully acknowledge the support of the National Science Foundation for the supporting the collection of the majority of the data stored in the database; in the past decade in particular we acknowledge support from IBN 9985910, IBN 0322613, IBN 0322781, BCS 0323553, BCS 0323596, DEB 0846286, DEB 0846532 and DEB 0919200. We are also very grateful for support from the National Institute of Aging (R01AG034513-01 and P01AG031719) and the Princeton Center for the Demography of Aging (P30AG024361). We also thank the Chicago Zoological Society, the Max Planck Institute for Demographic Research, the L.S.B. Leakey Foundation and the National Geographic Society for support at various times over the years. = Building your own database = If you're interested in building a database of your own, we have some [[DIY_Database|advice]]. |
Babase -- The Wiki
Contents
Using Babase
Accessing Data
Access the Database Via phpPgAdmin (You know you want to!)
Working Data Drafts - Before using any of the data linked or referred to on this page, please contact the Babase Administrator
Learning
The Babase Wiki -- The Babase website, you can help improve it!
Babase Help -- Other help links
Babase Best Practices -- Tips and suggestions to keep in mind while using the database
Babase Quiz -- New Users must take this quiz before starting work with babase. See Niki or Jake for information
Reference Material
The Babase System Technical Specifications (Web, un-paginated) (Web, paginated)
Babase user FAQs
Other Babase Documentation - Wish List, To Do's Etc
Data Management
Data Management Tasks - primarily for use by data managers
Photo Organizer - a photo repository (currently being sunsetted)
Status of Babase Datasets
Dataset |
Last Updated |
Data Included |
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Group Membership and Life Events* |
11 Aug 2023 |
Data through Jun 2023 |
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Demography backfill |
6 Dec 2023 |
Demography note and confidence assignment backfill - complete for Linda's, Weaver's, Omo's, Viola's, Nyayo's, Proton's, and Dotty's groups (though some ranks may require adjusting); Hook's group backfill for 1989-1994 complete; Alto's fission backfill (Jan 1989-Feb 1992) complete. Census (but not demography) backfill is also complete for Alto's from Sep 1980 onward and for Hook's from May 1983 onward. Most other groups censuses have also been backfilled with the exception of Stud's group. Lodge groups have not been backfilled. |
||
Sexual Cycles** |
11 Aug 2023 |
Cycling data through Jun 2023 (data for the TZ loss and prior requires some correction now that cycgaps issues are fixed); sexskins and repro notes through Dec 2022 and backfilled through 1997 (except for Joy's and Nzige's 1997 data, which throw a lot of errors) |
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Interaction Data |
3 Nov 2022 |
Data through Jun 2022 |
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SWERB Data |
2x/ every week |
Data until ~(at most) 7 days previous to today |
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Rankdates Table |
23 May 2023 |
Data Through Mar 2023 (by dates assigned to obviously-adult immigrants and males > 7yrs, 5mos and residing in nonstudy groups updated through same quarter as demography and repro tables) |
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Ranks Table |
28 Jun 2022 |
ALM/ADM through Dec 2021; ALF/ADF through Dec 2021 |
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Min_Maxs view |
11 Aug 2023 |
temp and rain data from Aug 1976 through Jun 2023 |
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11 Aug 2023 |
WeatherHawk meterological data through Jun 2023 |
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Wounds and Pathologies |
11 Aug 2023 |
tables and views beginning with wp_ through Jun 2023 |
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Princeton babase_pending tables |
6 Dec 2023 |
neonatals, subgroups, intergroup_encounters, hybridity_rawmorpho, deaths, dispersenotes, & corpse_info through Sep 2023 |
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Duke babase_pending tables |
3 Nov 2022 |
Predation_By, Predation_On, Human_Disturb through Sep 2022 |
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Genetic Inventory |
Updated constantly, as needed |
Tissues that are or ever have been at Duke and Notre Dame, Extracted DNA's/RNA's |
||
Hmm... |
Jan 2022 |
The below datasets have all moved around. We need to update those sections. |
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Genetic Markers: msat_reactions |
Apr 2018 |
Reaction info through plate 415 |
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Genetic Markers: msat_results |
Apr 2018 |
Results data through plate 415 |
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Genetic Markers: Genotypes |
Dec 2018 |
All finalized microsatellite genotypes through end of year 2018 |
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Hormone Samples |
May 2022 |
Fecal samples through 17 Apr 2021 |
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Hormone Preps and Results |
May 2022 |
All lab work done through 27 Apr 2022 |
||
Source Code
All of the Babase source code is freely available right here.
Acknowledgments
We gratefully acknowledge the support of the National Science Foundation for the supporting the collection of the majority of the data stored in the database; in the past decade in particular we acknowledge support from IBN 9985910, IBN 0322613, IBN 0322781, BCS 0323553, BCS 0323596, DEB 0846286, DEB 0846532 and DEB 0919200. We are also very grateful for support from the National Institute of Aging (R01AG034513-01 and P01AG031719) and the Princeton Center for the Demography of Aging (P30AG024361). We also thank the Chicago Zoological Society, the Max Planck Institute for Demographic Research, the L.S.B. Leakey Foundation and the National Geographic Society for support at various times over the years.
Building your own database
If you're interested in building a database of your own, we have some advice.